PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33159_a_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 164aa    MW: 18680.4 Da    PI: 6.5083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33159_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-0896120126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f+  GtC+y  +C+FaH+
  Neem_33159_a_1  96 FKTKLCCKFRN-GTCPYITNCNFAHS 120
                     69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.2E-893126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-1593128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.14195122IPR000571Zinc finger, CCCH-type
SMARTSM003560.002195121IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-596120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSYARDSSEN VVHVIVGNGP PENWLPNSND SSVWATEDEY RVWNNNHDNS ADTPSNSNSN  60
YQSQTRSNSE QPPNKKSRNS SQDVNSKSKA IGKMFFKTKL CCKFRNGTCP YITNCNFAHS  120
IEELRRPPPN WQEIVAAHEE DRAVPNEAPR EEFQIPSLGL PIWR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445697.15e-87hypothetical protein CICLE_v10015789mg
RefseqXP_006485547.15e-87PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM34e-56C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A067DGT06e-87A0A067DGT0_CITSI; Uncharacterized protein
TrEMBLA0A067DQ861e-87A0A067DQ86_CITSI; Uncharacterized protein
TrEMBLV4TZ875e-87V4TZ87_9R
STRINGGLYMA01G10610.11e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-57C3H family protein